STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BGLY_3082Transcriptional regulator, AraC family. (408 aa)    
Predicted Functional Partners:
BGLY_3081
Putative beta-hexosaminidase, putative lipoprotein.
 
    0.712
BGLY_3080
Hypothetical protein.
 
    0.702
BGLY_2353
Hypothetical protein.
  
     0.548
BGLY_0949
Hypothetical protein.
  
     0.516
BGLY_3078
alfa-L-rhamnosidase.
 
     0.492
BGLY_3079
Putative Na+:altronate/mannonate symporter.
 
     0.476
ydeC
Putative HTH-type transcriptional regulator YdeC.
 
  
0.434
BGLY_0883
Ada regulatory protein/6-O-methylguanine-DNA methyltransferase.
 
    
0.404
Your Current Organism:
Bacillus glycinifermentans
NCBI taxonomy Id: 1664069
Other names: B. glycinifermentans, Bacillus glycinifermentans Kim et al. 2015, Bacillus sp. GO-13, Bacillus sp. KJ-17, KACC 18425, NRRL B-65291, strain GO-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.