STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BGLY_4686ABC transporter, permease protein. (245 aa)    
Predicted Functional Partners:
yvfR
ABC transporter.
 
  
 0.963
BGLY_4687
Sensor histidine kinase.
 
  
 0.941
yvfU
Putative transcriptional regulatory protein YvfU.
 
   
 0.922
BGLY_1075
Hypothetical protein.
  
  
 0.629
BGLY_0608
Hypothetical protein.
  
     0.519
BGLY_4409
ABC transporter, permease protein.
  
 
  0.442
BGLY_0241
Nitroreductase family protein.
  
  
 0.431
nfrA2
NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.431
ydgI
Putative NAD(P)H nitroreductase YdgI.
  
  
 0.431
nfsB
NADH-dependent nitro/flavin oxidoreductase.
  
  
 0.431
Your Current Organism:
Bacillus glycinifermentans
NCBI taxonomy Id: 1664069
Other names: B. glycinifermentans, Bacillus glycinifermentans Kim et al. 2015, Bacillus sp. GO-13, Bacillus sp. KJ-17, KACC 18425, NRRL B-65291, strain GO-13
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