STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macB_1Macrolide export ATP-binding/permease protein MacB. (442 aa)    
Predicted Functional Partners:
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
 0.997
macB_7
Macrolide export ATP-binding/permease protein MacB.
 
 0.989
macB_8
Macrolide export ATP-binding/permease protein MacB.
 
 0.989
macB_14
Macrolide export ATP-binding/permease protein MacB.
 
 0.980
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
 0.971
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD.
 
 0.970
czcB
Cation efflux system protein CzcB.
 
  
 0.968
macB_12
Macrolide export ATP-binding/permease protein MacB.
 
 0.968
macB_11
Macrolide export ATP-binding/permease protein MacB.
 
 0.967
ftsE_2
Cell division ATP-binding protein FtsE.
 
 0.965
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.