STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM70974.1Glycyl-glycine endopeptidase ALE-1 precursor. (362 aa)    
Predicted Functional Partners:
fliN
Flagellar motor switch protein FliN.
   
   0.708
fur_1
Ferric uptake regulation protein; Belongs to the Fur family.
  
    0.582
CUM98458.1
Uncharacterised protein.
 
     0.530
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
 
   
 0.524
gmr_1
Cyclic di-GMP phosphodiesterase Gmr.
       0.507
CUM70924.1
Protein of uncharacterised function (DUF2899).
       0.501
CUN28057.1
Predicted NADH:ubiquinone oxidoreductase%2C subunit RnfG.
  
     0.423
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.