STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiN_1Probable diguanylate cyclase YfiN. (533 aa)    
Predicted Functional Partners:
cph2_7
Bacteriophytochrome cph2.
 
  
 0.842
cph2_1
Bacteriophytochrome cph2.
 
  
 0.841
cph2_9
Bacteriophytochrome cph2.
 
  
 0.810
cph2_8
Bacteriophytochrome cph2.
  
 0.809
gmr_7
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.808
cph2_4
Bacteriophytochrome cph2.
  
 0.806
cph2_6
Bacteriophytochrome cph2.
  
 0.806
dosP
Oxygen sensor protein DosP.
 
  
 0.801
rpfG_6
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.799
gmr_5
Cyclic di-GMP phosphodiesterase Gmr.
 
  
 0.799
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.