STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1. (213 aa)    
Predicted Functional Partners:
CUM72485.1
ComEC family competence protein.
 
  
 0.907
yycG_1
Sensor histidine kinase YycG.
       0.836
CUM72466.1
Spore germination protein.
  
    0.800
yycF_1
Transcriptional regulatory protein YycF.
       0.785
CUM81395.1
Flp pilus assembly protein%2C protease CpaA.
   
  
 0.631
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.625
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
     
 0.556
CUN04763.1
DNA utilization protein GntX.
  
  
 0.524
brpA
Biofilm regulatory protein A precursor.
 
     0.510
CUM72400.1
Maltose ABC transporter periplasmic protein.
       0.509
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.