STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheW_1Chemotaxis protein CheW. (147 aa)    
Predicted Functional Partners:
cheA
Chemotaxis protein CheA.
 
 0.998
tap_1
Dipeptide chemoreceptor protein.
 
 0.989
cheB
Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.984
mcp4_5
Methyl-accepting chemotaxis protein 4.
 
 0.975
mcp4_1
Methyl-accepting chemotaxis protein 4.
 
 0.973
tap_2
Dipeptide chemoreceptor protein.
 
 0.973
mcp4_6
Methyl-accepting chemotaxis protein 4.
 
 0.973
tap_3
Dipeptide chemoreceptor protein.
 
 0.973
mcpB_2
H3.
 
 0.973
tap_4
Dipeptide chemoreceptor protein.
 
 0.973
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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