STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytBModifier protein of major autolysin. (751 aa)    
Predicted Functional Partners:
CUM75077.1
YihY family inner membrane protein; Belongs to the UPF0761 family.
       0.702
yabP
Sporulation protein YabP.
 
   
 0.587
CUM72555.1
Stage II sporulation protein P.
  
  
 0.527
CUN07610.1
SpoIIIAH-like protein.
  
  
 0.504
CUN23064.1
Putative glycogen debranching enzyme%2C archaeal type.
  
     0.500
spoIVA
Stage IV sporulation protein A.
  
  
 0.491
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.467
dnaI_1
Primosomal protein DnaI.
   
    0.461
dnaC_3
DNA replication protein dnaC.
   
    0.461
dnaI_2
Primosomal protein DnaI.
   
    0.461
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
Server load: low (16%) [HD]