STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM75790.1Molybdenum hydroxylase accessory protein%2C YgfJ family. (165 aa)    
Predicted Functional Partners:
hcrA
4-hydroxybenzoyl-CoA reductase subunit alpha.
 
   
 0.865
cutS
Carbon monoxide dehydrogenase small chain.
 
  
 0.861
CUM75722.1
Putative oxidoreductase.
 
  
 0.837
yqeC
Putative selenium-dependent hydroxylase accessory protein YqeC.
 
  
 0.796
pdp
Pyrimidine-nucleoside phosphorylase.
       0.773
CUM80850.1
Xanthine dehydrogenase accessory protein XdhC.
 
  
 0.770
CUM75835.1
Sporulation protein YqfC.
       0.655
CUM75852.1
Sporulation protein YqfD.
       0.655
ybeZ
PhoH-like protein.
       0.655
CUM75886.1
Uncharacterised protein.
       0.655
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.