STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM81412.1Flp pilus assembly protein CpaB. (282 aa)    
Predicted Functional Partners:
CUM81474.1
Flp pilus assembly protein TadB.
 
  
 0.989
CUM81460.1
Flp pilus assembly protein TadB.
 
  
 0.985
CUM81445.1
Type IV secretion system protein virB11.
 
  
 0.968
CUM81429.1
Flp pilus assembly protein%2C ATPase CpaE.
 
    0.961
CUM81490.1
Uncharacterised protein.
 
     0.943
CUM81505.1
Uncharacterised protein.
 
     0.943
CUM81395.1
Flp pilus assembly protein%2C protease CpaA.
 
   
 0.898
CUM81535.1
Uncharacterised protein.
 
     0.873
CUM81637.1
Conjugal transfer ATP-binding protein TraC.
 
     0.828
dpnM
Modification methylase DpnIIA.
 
     0.811
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.