STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM81637.1Conjugal transfer ATP-binding protein TraC. (611 aa)    
Predicted Functional Partners:
CUM81653.1
Putative amidoligase enzyme.
 
     0.912
CUM81621.1
Uncharacterised protein.
      0.907
CUM81535.1
Uncharacterised protein.
 
     0.906
CUM81689.1
Probable endopeptidase cgR_2070 precursor.
 
    0.892
banIM
Modification methylase BanI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.843
CUM81505.1
Uncharacterised protein.
 
     0.836
CUM81763.1
Domain of uncharacterised function (DUF3846).
 
    0.835
CUM81490.1
Uncharacterised protein.
 
     0.834
CUM81429.1
Flp pilus assembly protein%2C ATPase CpaE.
 
     0.831
CUM81412.1
Flp pilus assembly protein CpaB.
 
     0.828
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.