STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM84751.1Uncharacterized conserved protein%2C contains FHA domain. (352 aa)    
Predicted Functional Partners:
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 
 0.989
fliN
Flagellar motor switch protein FliN.
  
 
 0.983
CUN26992.1
Aerobic respiration control sensor protein ArcB.
  
  
 0.935
CUN06033.1
ADP-heptose:LPS heptosyl transferase I.
  
 
 0.934
CUN04648.1
Rod binding protein.
   
    0.929
cph2_3
Bacteriophytochrome cph2.
  
  
 0.908
CUN19389.1
Flagellar assembly protein H.
  
 
 0.907
yscN
Probable ATP synthase YscN.
  
 
 0.874
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.867
gmr_8
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.857
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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