STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjP_5Inner membrane ABC transporter permease protein ycjP. (321 aa)    
Predicted Functional Partners:
ugpA_3
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
 0.995
CUM90885.1
Uncharacterised protein.
 
 0.992
ycjO_3
Inner membrane ABC transporter permease protein ycjO.
 
 0.964
ycjO_6
Inner membrane ABC transporter permease protein ycjO.
 
 0.964
ycjO_7
Inner membrane ABC transporter permease protein ycjO.
 
 0.963
lipO_1
Lipoprotein lplA.
 
 0.951
CUN24211.1
Maltose-binding periplasmic proteins/domains.
 
 0.947
CUM86909.1
Maltose-binding periplasmic proteins/domains.
 
  0.939
lipO_2
Lipoprotein lplA.
  
  0.912
CUN26431.1
Maltose-binding periplasmic proteins/domains.
 
  0.909
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.