STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spkDSerine/threonine-protein kinase D. (1407 aa)    
Predicted Functional Partners:
CUM84751.1
Uncharacterized conserved protein%2C contains FHA domain.
 
 
 0.763
CUM72957.1
Uncharacterised protein.
 
 
 0.678
CUN05063.1
Capsular polysaccharide biosynthesis protein.
    
 
 0.667
CUM72919.1
Uncharacterised protein.
 
 
 
 0.614
CUM72903.1
FHA domain.
   
 
 0.607
CUN30083.1
Protein of uncharacterised function DUF124.
  
     0.585
stp_1
Serine/threonine phosphatase stp.
 
 
 0.583
CUM95681.1
Uncharacterised protein.
       0.509
CUM95717.1
Uncharacterised protein.
       0.497
stp_2
Serine/threonine phosphatase stp.
 
 
 0.464
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.