STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM97383.1Divergent AAA domain. (250 aa)    
Predicted Functional Partners:
CUN32667.1
Uncharacterised protein.
 
     0.976
recG
ATP-dependent DNA helicase recG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
CUM97335.1
Predicted ATP-binding protein involved in virulence.
  
    0.774
pcrA_1
ATP-dependent DNA helicase pcrA.
       0.674
CUM97315.1
Isopentenyl-diphosphate delta-isomerase.
       0.523
CUN31616.1
Divergent AAA domain.
 
     0.487
CUM97292.1
Exonuclease V subunit alpha.
       0.468
CUM97269.1
Bifunctional RNase H/acid phosphatase.
       0.445
smtA
Putative S-adenosyl-L-methionine-dependent methyltransferase.
  
    0.441
CUM97222.1
Predicted acetyltransferase involved in intracellular survival and related acetyltransferases.
       0.436
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.