STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN09543.1Helix-turn-helix domain. (78 aa)    
Predicted Functional Partners:
CUN09559.1
RNA polymerase sigma factor SigW.
 
    0.952
CUN09588.1
Transcriptional regulator%2C y4mF family.
  
     0.752
CUN13865.1
RNA polymerase sigma factor.
 
    0.721
CUN09684.1
Conjugative transposon protein TcpC.
  
    0.712
CUN09795.1
Antirestriction protein.
  
     0.691
CUN09728.1
Phosphoinositide polyphosphatase (Sac family).
  
     0.685
CUN29567.1
Excisionase from transposon Tn916.
 
     0.677
CUM95231.1
Conjugative transposon protein TcpC.
  
    0.674
CUM95032.1
Bacterial protein of uncharacterised function (DUF961).
  
     0.666
CUN09915.1
Transcriptional regulator%2C y4mF family.
  
    0.645
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.