STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN09684.1Conjugative transposon protein TcpC. (301 aa)    
Predicted Functional Partners:
iap_3
Probable endopeptidase p60 precursor.
 
   0.947
CUN09728.1
Phosphoinositide polyphosphatase (Sac family).
 
    0.944
CUN09773.1
TcpE family.
 
    0.944
CUN09751.1
Type IV secretory pathway%2C VirB4 components.
 
     0.943
CUN23550.1
ABC exporter transmembrane subunit%2C DevC protein.
  
 
 0.898
CUN09795.1
Antirestriction protein.
    0.888
CUN09816.1
Antirestriction protein (ArdA).
 
     0.872
CUN09876.1
Uncharacterised protein.
 
    0.842
CUN09915.1
Transcriptional regulator%2C y4mF family.
 
    0.829
ftsK_2
DNA translocase FtsK.
 
   
 0.811
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.