STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjP_7Inner membrane ABC transporter permease protein ycjP. (270 aa)    
Predicted Functional Partners:
ugpA_4
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 0.973
lacE_1
Lactose-binding protein precursor.
 
 0.970
malF_1
Maltose transport system permease protein malF.
 
 0.969
lacE_2
Lactose-binding protein precursor.
 
 
 0.916
lacE_3
Lactose-binding protein precursor.
 
 
 0.887
ugpA_2
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
 0.859
ugpA_7
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
 0.858
CUM99811.1
Uncharacterised protein.
  
 
 0.837
CUN18640.1
Maltose-binding periplasmic proteins/domains.
  
 
 0.837
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 
 0.826
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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