STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN13850.1FtsX-like permease family. (735 aa)    
Predicted Functional Partners:
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.967
graS_2
Sensor histidine kinase graS.
 
    0.890
graR_2
Glycopeptide resistance-associated protein R.
 
     0.864
CUN13877.1
Helix-turn-helix domain.
 
     0.568
CUN13865.1
RNA polymerase sigma factor.
 
     0.541
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.461
CUM95231.1
Conjugative transposon protein TcpC.
  
 
 0.461
CUN09684.1
Conjugative transposon protein TcpC.
  
 
 0.461
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
 
 0.434
macB_2
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.434
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.