STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marA_1Multiple antibiotic resistance protein marA. (246 aa)    
Predicted Functional Partners:
araC_2
Arabinose operon regulatory protein.
 
 
 0.821
adaA_7
Methylphosphotriester-DNA--protein-cysteine S-methyltransferase.
  
   0.793
tetD
DNA-binding transcriptional regulator MelR.
  
 
   0.788
rhaS_8
L-rhamnose operon regulatory protein rhaS.
  
   0.777
araC_4
Arabinose operon regulatory protein.
  
     0.769
rhaS_5
L-rhamnose operon regulatory protein rhaS.
  
     0.768
soxS_3
Regulatory protein soxS.
  
     0.767
btr_1
Bacillibactin transport regulator.
  
     0.766
rhaS_6
L-rhamnose operon regulatory protein rhaS.
  
   0.748
CUN18640.1
Maltose-binding periplasmic proteins/domains.
 
     0.633
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.