STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN25686.1FtsX-like permease family. (863 aa)    
Predicted Functional Partners:
macB_11
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.941
sphR
Alkaline phosphatase synthesis transcriptional regulatory protein sphR.
 
     0.838
phoR_6
Alkaline phosphatase synthesis sensor protein phoR.
 
     0.826
CUN20821.1
Uncharacterised protein.
  
 
   0.777
macB_10
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.776
CUN04282.1
Creatinine amidohydrolase.
  
     0.773
CUN04257.1
Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
    0.765
CUM93501.1
Uncharacterized protein conserved in bacteria.
  
     0.628
flr_3
Flavoredoxin.
  
     0.597
macB_15
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.597
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
Server load: low (14%) [HD]