STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN27471.1Conserved hypothetical integral membrane protein. (198 aa)    
Predicted Functional Partners:
ykoD
Putative HMP/thiamine import ATP-binding protein YkoD.
 
    0.960
ecfT_2
Energy-coupling factor transporter transmembrane protein EcfT.
     0.952
irtA_3
Iron import ATP-binding/permease protein IrtA.
 
     0.879
CUN27434.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
     0.876
araC_3
Arabinose operon regulatory protein.
 
    0.823
acrR
Potential acrAB operon repressor.
 
   
 0.724
irtA_1
Iron import ATP-binding/permease protein IrtA.
 
     0.695
irtA_2
Iron import ATP-binding/permease protein IrtA.
 
     0.691
CUM98848.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
     0.678
CUN09625.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
     0.658
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.