STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUN27986.1Transcriptional regulator SlyA. (145 aa)    
Predicted Functional Partners:
CUN27978.1
Sulfite exporter TauE/SafE.
 
     0.924
yheI
Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI.
 
     0.565
CUN27992.1
Putative multidrug export ATP-binding/permease protein SAV1866.
 
     0.558
mepA_15
Staphylococcal virulence regulator protein A.
  
    0.529
CUN13865.1
RNA polymerase sigma factor.
  
  
 0.454
mepA_5
Multidrug export protein mepA.
  
    0.440
CUN13877.1
Helix-turn-helix domain.
  
     0.440
CUN10689.1
Uncharacterised protein.
 
   
 0.420
CUN28004.1
DNA-binding transcriptional repressor MarR.
       0.413
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.