STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynZEndo-1%2C4-beta-xylanase Z precursor. (781 aa)    
Predicted Functional Partners:
xynA_2
Endo-1%2C4-beta-xylanase A precursor.
 
 0.911
xynD
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
   
 0.845
CUN30385.1
Uncharacterised protein.
 
   
 0.811
xynB_11
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.801
xynA_1
Endo-1%2C4-beta-xylanase A precursor.
 
 
 0.741
xylA_2
Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.733
xynB_5
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.717
CUN14677.1
Acidobacterial duplicated orphan permease.
  
     0.702
CUN30434.1
Acidobacterial duplicated orphan permease.
  
  
 0.648
xynB_9
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.643
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.