STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoR_9Alkaline phosphatase synthesis sensor protein phoR. (343 aa)    
Predicted Functional Partners:
regX3_4
Sensory transduction protein regX3.
 
 0.960
macB_15
Macrolide export ATP-binding/permease protein MacB.
 
     0.846
sphR
Alkaline phosphatase synthesis transcriptional regulatory protein sphR.
 
 0.830
CUN31788.1
Outer membrane-specific lipoprotein transporter subunit LolE.
 
     0.780
CUN25647.1
Acidobacterial duplicated orphan permease.
 
     0.766
macB_10
Macrolide export ATP-binding/permease protein MacB.
 
     0.723
regX3_2
Sensory transduction protein regX3.
 
 0.687
cheR
Chemotaxis protein methyltransferase.
      0.644
CUN23550.1
ABC exporter transmembrane subunit%2C DevC protein.
     0.643
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein phoP.
 
 
 
 0.602
Your Current Organism:
Roseburia intestinalis
NCBI taxonomy Id: 166486
Other names: DSM 14610, NCIMB 13810, R. intestinalis, Roseburia intestinalis Duncan et al. 2002 emend. Duncan et al. 2006, strain L1-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.