STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiAN-acetylmuramoyl-L-alanine amidase. (409 aa)    
Predicted Functional Partners:
lolA
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.928
CUX79877.1
Membrane associated serine protease, rhomboid family.
  
   0.788
CUX81197.1
Membrane associated serine protease, rhomboid family.
  
   0.788
CUX82317.1
Rhomboid family protein.
  
   0.788
CUX82897.1
Membrane associated serine protease, rhomboid family.
  
   0.788
mrcA
Penicillin-binding protein 1A.
 
     0.759
CUX81046.1
Sporulation related domain-containing protein.
   
 0.735
CUX81970.1
Sporulation related domain-containing protein.
   
 0.735
CUX79645.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.721
folE
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.721
Your Current Organism:
Roseibaca calidilacus
NCBI taxonomy Id: 1666912
Other names: R. calidilacus, Rhodobacteraceae bacterium HL-91
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