CUX82272.1 protein (Roseibaca calidilacus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUX82272.1

ATP-binding cassette, subfamily B. (616 aa)

Predicted Functional Partners:

CUX81582.1

0.801

CUX79633.1

0.797

msbA

0.796

CUX80306.1

0.792

CUX82445.1

0.764

CUX80114.1

0.734

mrp

0.734

exoP

0.734

CUX83980.1

0.734

CUX82273.1

0.720

Your Current Organism:

Roseibaca calidilacus

NCBI taxonomy Id: 1666912
Other names: R. calidilacus, Rhodobacteraceae bacterium HL-91

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUX79633.1	CUX82272.1	Ga0058931_0317	Ga0058931_2276	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.797
CUX80114.1	CUX82272.1	Ga0058931_0819	Ga0058931_2276	ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	ATP-binding cassette, subfamily B.	0.734
CUX80306.1	CUX82272.1	Ga0058931_1014	Ga0058931_2276	ATP-binding cassette, subfamily B, multidrug efflux pump.	ATP-binding cassette, subfamily B.	0.792
CUX81582.1	CUX82272.1	Ga0058931_1851	Ga0058931_2276	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.801
CUX82272.1	CUX79633.1	Ga0058931_2276	Ga0058931_0317	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.797
CUX82272.1	CUX80114.1	Ga0058931_2276	Ga0058931_0819	ATP-binding cassette, subfamily B.	ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.734
CUX82272.1	CUX80306.1	Ga0058931_2276	Ga0058931_1014	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B, multidrug efflux pump.	0.792
CUX82272.1	CUX81582.1	Ga0058931_2276	Ga0058931_1851	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.801
CUX82272.1	CUX82273.1	Ga0058931_2276	Ga0058931_2277	ATP-binding cassette, subfamily B.	Hypothetical protein.	0.720
CUX82272.1	CUX82445.1	Ga0058931_2276	Ga0058931_2379	ATP-binding cassette, subfamily B.	Hypothetical protein.	0.764
CUX82272.1	CUX83980.1	Ga0058931_2276	Ga0058931_3290	ATP-binding cassette, subfamily B.	Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.	0.734
CUX82272.1	exoP	Ga0058931_2276	Ga0058931_2084	ATP-binding cassette, subfamily B.	Capsular exopolysaccharide family.	0.734
CUX82272.1	mrp	Ga0058931_2276	Ga0058931_0959	ATP-binding cassette, subfamily B.	ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.734
CUX82272.1	msbA	Ga0058931_2276	Ga0058931_2789	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B, MsbA.	0.796
CUX82273.1	CUX82272.1	Ga0058931_2277	Ga0058931_2276	Hypothetical protein.	ATP-binding cassette, subfamily B.	0.720
CUX82445.1	CUX82272.1	Ga0058931_2379	Ga0058931_2276	Hypothetical protein.	ATP-binding cassette, subfamily B.	0.764
CUX83980.1	CUX82272.1	Ga0058931_3290	Ga0058931_2276	Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.	ATP-binding cassette, subfamily B.	0.734
CUX83980.1	exoP	Ga0058931_3290	Ga0058931_2084	Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.	Capsular exopolysaccharide family.	0.547
exoP	CUX82272.1	Ga0058931_2084	Ga0058931_2276	Capsular exopolysaccharide family.	ATP-binding cassette, subfamily B.	0.734
exoP	CUX83980.1	Ga0058931_2084	Ga0058931_3290	Capsular exopolysaccharide family.	Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.	0.547