STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUX83858.1Protein of unknown function (DUF3576). (171 aa)    
Predicted Functional Partners:
lptE
LPS-assembly lipoprotein.
 
     0.877
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.837
holA
DNA polymerase III, delta subunit.
 
     0.805
CUX80400.1
Beta-barrel assembly machine subunit BamF.
  
     0.769
CUX83856.1
Outer membrane protein OmpU.
 
   
 0.749
bamE
Beta-barrel assembly machine subunit BamE.
  
     0.748
surA
Periplasmic chaperone for outer membrane proteins SurA.
  
     0.734
CUX81652.1
Hypothetical protein.
  
     0.722
CUX83967.1
Hypothetical protein.
  
     0.715
CUX79727.1
Hypothetical protein.
  
     0.710
Your Current Organism:
Roseibaca calidilacus
NCBI taxonomy Id: 1666912
Other names: R. calidilacus, Rhodobacteraceae bacterium HL-91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.