STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaBFlp pilus assembly protein CpaB. (282 aa)    
Predicted Functional Partners:
cpaC
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.990
cpaE
Pilus assembly protein CpaE.
 
  
 0.986
tadB
Tight adherence protein B.
 
  
 0.986
tadC
Tight adherence protein C.
 
  
 0.984
KPP87487.1
Hypothetical protein.
 
  
 0.981
cpaA
Prepilin peptidase CpaA.
 
  
 0.970
KPP85776.1
TadE-like protein.
 
  
 0.935
KPP85779.1
TadE-like protein.
 
  
 0.932
cpaF
Pilus assembly protein CpaF.
 
  
 0.930
flaF
Flagellar protein FlaF.
   
    0.884
Your Current Organism:
Rhodobacteraceae bacterium HLUCCO07
NCBI taxonomy Id: 1666914
Other names: R. bacterium HLUCCO07
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