STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDType 2a secretion system secretin GspD. (639 aa)    
Predicted Functional Partners:
KPQ07395.1
Type IV pilus biogenesis.
  
 
 0.985
gspF
Type 2a secretion system protein GspF.
 
  
 0.972
gspE
Type 2a secretion system ATPase GspE.
 
  
 0.967
pulG
Type 2a secretion system protein GspG.
  
 0.899
pulJ
Type 2a secretion system protein GspJ.
 
  
 0.875
pulK
Type 2a secretion system protein GspK.
 
   
 0.864
pulO
Bifunctional prepilin peptidase / N-methyltransferase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.851
KPQ00006.1
FHA domain.
  
  
 0.794
fliN
Flagellar motor switch protein FliN.
  
  
 0.695
KPQ07698.1
Protein of unknown function containing DUF3859 domain.
  
     0.566
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.