STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPQ07186.1Hypothetical protein. (258 aa)    
Predicted Functional Partners:
rpoE-3
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.977
KPQ05895.1
CheY-like receiver protein.
  
 
 0.913
rpoE-4
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.904
rpoE
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.900
rpoE-2
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.900
KPQ04603.1
Protein of unknown function (DUF3489).
  
 
 0.898
KPQ00004.1
Serine/threonine protein kinase, bacterial.
    
 
 0.640
KPQ07188.1
PIN domain.
       0.574
rlmI
23S rRNA (cytosine1962-C5)-methyltransferase RlmI.
       0.574
polA
DNA polymerase I PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.451
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.