STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPQ06689.1Bacterial pre-peptidase C-terminal domain. (593 aa)    
Predicted Functional Partners:
ydgD
Protease YdgD; Belongs to the peptidase S1B family.
 
     0.900
KPQ07606.1
Hypothetical protein.
  
     0.760
KPQ07564.1
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
     0.733
KPQ06016.1
Outer membrane porin.
  
     0.728
KPQ05789.1
Hypothetical protein.
  
     0.724
KPQ07502.1
Sulfotransferase domain.
  
     0.721
coaBC-2
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase.
  
     0.710
KPQ07746.1
Protein of unknown function containing DUF4139 domain.
  
     0.689
KPQ07562.1
Hypothetical protein.
  
     0.656
KPQ07504.1
Sulfotransferase family.
  
     0.651
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.