STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPQ06790.1Putative xylanase/chitin deacetylase. (276 aa)    
Predicted Functional Partners:
livG-3
Branched-chain amino acid transport system ATP-binding protein.
       0.741
livM-4
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.741
livH-4
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.741
KPQ06791.1
isopenicillin-N N-acyltransferase.
       0.693
KPQ06784.1
Glutamate carboxypeptidase.
 
  
  0.663
hyuA
N-methylhydantoinase A.
 
     0.643
hyuB
N-methylhydantoinase B.
 
     0.629
uraH
Hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 
  0.580
bcsA
UDP-forming cellullose synthase catalytic subunit CelA.
  
 
 0.571
KPQ07578.1
Glycosyltransferase.
  
 
 0.571
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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