STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptsNPTS system, nitrogen regulatory IIA component. (154 aa)    
Predicted Functional Partners:
pfkB
6-phosphofructokinase 2 PfkB; Belongs to the carbohydrate kinase PfkB family.
 
 
 0.945
manX
PTS system, mannose-specific IIA component ManX.
 
 
 0.926
hpr
Phosphocarrier protein Hpr.
 
 
 0.925
hpf
SSU ribosomal protein S30P/sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.923
KPQ07703.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.836
ptsP
Phosphotransferase system, enzyme I, PtsP; Belongs to the PEP-utilizing enzyme family.
  
   
 0.798
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.787
lptB
Lipopolysaccharide export system ATPase component LptB.
 
   
 0.702
lptA
Lipopolysaccharide export system chaperone component LptA.
  
  
 0.679
KPP98488.1
Putative Zn-dependent hydrolases of the beta-lactamase fold.
    
 0.667
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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