STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPQ06184.1ECF sigma factor. (164 aa)    
Predicted Functional Partners:
KPQ06828.1
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease componen.
 
     0.798
KPQ06829.1
Hypothetical protein.
 
     0.798
KPQ06827.1
Hypothetical protein.
 
     0.797
KPQ06188.1
Hypothetical protein.
  
     0.770
KPQ06831.1
Hypothetical protein.
 
     0.765
KPQ04298.1
YycH protein.
  
     0.761
KPQ04600.1
Hypothetical protein.
  
     0.731
KPQ06189.1
Bacteriophage tail assembly protein.
  
     0.713
KPQ04615.1
Hypothetical protein.
  
     0.699
KPQ06825.1
Helix-turn-helix domain.
 
     0.697
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.