STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPQ02353.1All-trans-retinol 13,14-reductase. (533 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase.
  
 
 0.779
catC
Muconolactone D-isomerase CatC.
       0.768
KPQ02355.1
Aldehyde dehydrogenase (NAD+).
  
 
  0.644
KPQ02354.1
Membrane dipeptidase.
       0.627
fadN
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.595
fadN-2
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.595
fadJ
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
   
 
  0.595
chlP
Geranylgeranyl reductase.
  
 
 0.491
KPQ06036.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.473
KPQ02351.1
Peptide/nickel transport system substrate-binding protein.
       0.452
Your Current Organism:
Rhodobacteraceae bacterium HLUCCA12
NCBI taxonomy Id: 1666916
Other names: R. bacterium HLUCCA12
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