STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001039045_00342Unannotated protein. (609 aa)    
Predicted Functional Partners:
GCA_001039045_00341
Unannotated protein.
 0.998
GCA_001039045_00568
Unannotated protein.
 0.994
GCA_001039045_00791
Unannotated protein.
  
 0.944
GCA_001039045_02834
Unannotated protein.
 
  
 0.937
GCA_001039045_02123
Unannotated protein.
  
 
 0.935
GCA_001039045_01105
Unannotated protein.
     
 0.930
GCA_001039045_02832
Unannotated protein.
    
 0.930
GCA_001039045_02833
Unannotated protein.
    
 0.930
GCA_001039045_01520
Unannotated protein.
    
 0.926
GCA_001039045_01584
Unannotated protein.
     
 0.920
Your Current Organism:
Lactobacillus herbarum
NCBI taxonomy Id: 1670446
Other names: CCTCC AB2015090, DSM 100358, L. herbarum, Lactobacillus herbarum Mao et al. 2015, Lactobacillus sp. TCF032-E4, strain TCF032-E4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.