STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001039045_00814Unannotated protein. (196 aa)    
Predicted Functional Partners:
GCA_001039045_02230
Unannotated protein.
 0.999
GCA_001039045_00662
Unannotated protein.
   
 0.967
GCA_001039045_01435
Unannotated protein.
  
 0.967
GCA_001039045_01156
Unannotated protein.
   
 0.966
GCA_001039045_00766
Unannotated protein.
 
 
 0.941
GCA_001039045_02071
Unannotated protein.
   
  
 0.924
GCA_001039045_02069
Unannotated protein.
   
 
 0.908
GCA_001039045_01108
Unannotated protein.
  
 0.905
GCA_001039045_00767
Unannotated protein.
 
 
 0.902
GCA_001039045_02070
Unannotated protein.
   
 
 0.897
Your Current Organism:
Lactobacillus herbarum
NCBI taxonomy Id: 1670446
Other names: CCTCC AB2015090, DSM 100358, L. herbarum, Lactobacillus herbarum Mao et al. 2015, Lactobacillus sp. TCF032-E4, strain TCF032-E4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.