STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001039045_02239Unannotated protein. (332 aa)    
Predicted Functional Partners:
GCA_001039045_02707
Unannotated protein.
  
 
 0.999
GCA_001039045_00748
Unannotated protein.
 
 
 0.992
GCA_001039045_00742
Unannotated protein.
 
 
 0.991
GCA_001039045_01153
Unannotated protein.
  
 0.979
GCA_001039045_01154
Unannotated protein.
  
 0.979
GCA_001039045_00838
Unannotated protein.
    
 0.977
GCA_001039045_02091
Unannotated protein.
    
 0.936
GCA_001039045_02529
Unannotated protein.
    
 0.932
GCA_001039045_02240
Unannotated protein.
 
   
 0.873
GCA_001039045_02241
Unannotated protein.
  
    0.840
Your Current Organism:
Lactobacillus herbarum
NCBI taxonomy Id: 1670446
Other names: CCTCC AB2015090, DSM 100358, L. herbarum, Lactobacillus herbarum Mao et al. 2015, Lactobacillus sp. TCF032-E4, strain TCF032-E4
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.