STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001039045_02422Unannotated protein. (317 aa)    
Predicted Functional Partners:
GCA_001039045_02421
Unannotated protein.
 
     0.959
GCA_001039045_02423
Unannotated protein.
 
     0.940
GCA_001039045_01084
Unannotated protein.
  
     0.769
GCA_001039045_00994
Unannotated protein.
  
     0.754
GCA_001039045_02575
Unannotated protein.
  
     0.742
GCA_001039045_01964
Unannotated protein.
  
     0.713
GCA_001039045_00651
Unannotated protein.
  
     0.703
GCA_001039045_00745
Unannotated protein.
  
     0.687
GCA_001039045_02559
Unannotated protein.
  
     0.671
GCA_001039045_02258
Unannotated protein.
  
     0.625
Your Current Organism:
Lactobacillus herbarum
NCBI taxonomy Id: 1670446
Other names: CCTCC AB2015090, DSM 100358, L. herbarum, Lactobacillus herbarum Mao et al. 2015, Lactobacillus sp. TCF032-E4, strain TCF032-E4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.