STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPM_0133Predicted dehydrogenase. (317 aa)    
Predicted Functional Partners:
CPM_1125
Dolichyl-phosphate beta-D-mannosyltransferase; ATT start codon.
     
 0.765
CPM_1055
dTDP-D-glucose 4,6-dehydratase.
  
  
 0.668
CPM_1288
Ribokinase.
  
  
 0.579
CPM_0132
Major facilitator superfamily permease.
       0.566
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
 
 0.501
CPM_1817
Pantothenate kinase.
    
  0.474
CPM_0109
Gluconolactonase.
 
  
 0.439
CPM_0234
NADPH:quinone reductase or related Zn-dependent oxidoreductase.
 
 
 0.415
CPM_0215
NAD-dependent aldehyde dehydrogenase.
  
  
 0.411
CPM_0344
NAD-dependent aldehyde dehydrogenase.
  
  
 0.411
Your Current Organism:
Cuniculiplasma divulgatum
NCBI taxonomy Id: 1673428
Other names: C. divulgatum, Cuniculiplasma divulgatum Golyshina et al. 2016, JCM 30642, Thermoplasmatales archaeon PM4, Thermoplasmatales archaeon S5, VKM B-2941, strain S5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.