STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPM_1172Hydrogenase 4 subunit F. (451 aa)    
Predicted Functional Partners:
CPM_1174
Formate hydrogenlyase subunit HycD.
 
 
 0.995
CPM_1170
Ni,Fe-hydrogenase III small subunit.
 
 
 0.993
CPM_1171
Ni,Fe-hydrogenase III large subunit.
 
 0.993
CPM_1699
NADH dehydrogenase subunit L.
 
0.961
CPM_1173
Hydrogenase 4 membrane component (E).
  
  
 0.881
CPM_1169
Hydrogenase 4 subunit B.
 
    
0.854
CPM_1175
30S ribosomal protein S17e.
       0.773
CPM_1703
NADH dehydrogenase subunit I.
  
 
 0.706
CPM_1707
NADH dehydrogenase subunit B; Belongs to the complex I 20 kDa subunit family.
   
 
 0.546
CPM_1176
Radical SAM superfamily enzyme.
       0.535
Your Current Organism:
Cuniculiplasma divulgatum
NCBI taxonomy Id: 1673428
Other names: C. divulgatum, Cuniculiplasma divulgatum Golyshina et al. 2016, JCM 30642, Thermoplasmatales archaeon PM4, Thermoplasmatales archaeon S5, VKM B-2941, strain S5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.