STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPM_1176Radical SAM superfamily enzyme. (353 aa)    
Predicted Functional Partners:
CPM_0742
Archaeosine tRNA-ribosyltransferase.
 
     0.789
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.782
CPM_0633
NMD3 family protein.
  
     0.645
CPM_0399
Transcriptional regulator.
  
     0.643
CPM_0157
Hypothetical protein; Belongs to the UPF0179 family.
  
     0.636
CPM_1905
Coiled-coil protein.
  
     0.632
rpl40e
50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.630
CPM_0244
Predicted metal-dependent hydrolase (urease superfamily).
  
     0.621
CPM_1735
Predicted transcriptional regulator.
  
     0.616
CPM_0182
Orotate phosphoribosyltransferase homolog; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
     0.594
Your Current Organism:
Cuniculiplasma divulgatum
NCBI taxonomy Id: 1673428
Other names: C. divulgatum, Cuniculiplasma divulgatum Golyshina et al. 2016, JCM 30642, Thermoplasmatales archaeon PM4, Thermoplasmatales archaeon S5, VKM B-2941, strain S5
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