STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPM_1329Short-chain dehydrogenase/reductase SDR. (645 aa)    
Predicted Functional Partners:
CPM_1328
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.812
pdaD
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
       0.775
CPM_1288
Ribokinase.
  
 
 0.593
gap
Glyceraldehyde-3-phosphate dehydrogenase.
  
 
 0.590
CPM_0776
Serine/threonine protein kinase.
  
 0.574
CPM_1326
Hypothetical protein.
       0.553
CPM_0405
6-pyruvoyl-tetrahydropterin synthase.
  
 
 0.537
mre11
DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family.
  
 
 0.537
CPM_1660
aspartyl/glutamyl-tRNA amidotransferase subunit A.
  
 
 0.537
CPM_1325
Molybdenum cofactor biosynthesis protein A.
       0.529
Your Current Organism:
Cuniculiplasma divulgatum
NCBI taxonomy Id: 1673428
Other names: C. divulgatum, Cuniculiplasma divulgatum Golyshina et al. 2016, JCM 30642, Thermoplasmatales archaeon PM4, Thermoplasmatales archaeon S5, VKM B-2941, strain S5
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