STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPM_1505Wybutosine (yW) biosynthesis enzyme, TYW2 transferase. (322 aa)    
Predicted Functional Partners:
taw1
Wybutosine (yW) biosynthesis enzyme, Fe-S oxidoreductase; Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).
  
  
 0.747
CPM_0335
H/ACA RNA-protein complex component Cbf5p.
  
  
 0.575
CPM_1507
Porphobilinogen deaminase.
  
    0.567
CPM_0633
NMD3 family protein.
 
    0.566
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.546
CPM_1508
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.546
CPM_1499
DNA-directed RNA polymerase subunit D.
 
    0.534
CPM_1382
Intramembrane-cleaving zinc metalloprotease S2P.
  
     0.530
CPM_1496
JAMM family zinc metalloprotease.
 
    0.527
CPM_1503
Hypothetical protein.
       0.502
Your Current Organism:
Cuniculiplasma divulgatum
NCBI taxonomy Id: 1673428
Other names: C. divulgatum, Cuniculiplasma divulgatum Golyshina et al. 2016, JCM 30642, Thermoplasmatales archaeon PM4, Thermoplasmatales archaeon S5, VKM B-2941, strain S5
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