Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pro_1016Uracil-DNA glycosylase. (202 aa)    
Predicted Functional Partners:
gcpE
Deoxyxylulose pathway of isoprenoid biosynthesis-related protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.817
Pro_1017
Lactoylglutathione lyase family enzyme.
       0.756
prc-2
Periplasmic protease; Belongs to the peptidase S41A family.
  
    0.725
Pro_1018
Aspartate aminotransferase family enzyme.
       0.599
tesA
Arylesterase; Translationally coupled to PhnC related to c-p lyase.
  
    0.586
phnD
ABC-type phosphate/phosphonate transport system periplasmic component.
       0.577
phnE
ABC-type phosphate/phosphonate transport system ATPase component; Translationally coupled to PhnD.
       0.577
phnC
ABC-type phosphate/phosphonate transport system permease component.
       0.577
polA
DNA polymerase I 3'-5' exonuclease and polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.528
Pro_0162
Inactive similar to metal-dependent protease; Putative molecular chaperone.
  
    0.484
Your Current Organism:
Prochlorococcus marinus CCMP1375
NCBI taxonomy Id: 167539
Other names: P. marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus SS120, Prochlorococcus marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus subsp. marinus str. SS120
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