STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pro_1580Predicted protein. (73 aa)    
Predicted Functional Partners:
hsdS
Restriction endonuclease S subunit; Possible independent HGT to Nostoc.
 
 
 0.961
Pro_0628
Uncharacterized conserved protein; BS_yeeC ortholog; apparent HGT.
  
 
 0.930
Pro_0607
Superfamily I DNA/RNA helicase; Probably involved in mRNA decay, RNT1 homolog; Apparent HG, not found in other cyanos.
  
  
 0.499
Pro_1581
Uncharacterized conserved protein.
       0.499
folE-2
GTP cyclohydrolase I.
       0.472
Pro_0630
Type II restriction enzyme, methylase subunit.
  
    0.409
Pro_0464
Predicted RNA-binding protein; Similar to eukaryotic snRNP.
  
    0.408
Your Current Organism:
Prochlorococcus marinus CCMP1375
NCBI taxonomy Id: 167539
Other names: P. marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus SS120, Prochlorococcus marinus subsp. marinus str. CCMP1375, Prochlorococcus marinus subsp. marinus str. SS120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.