STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABM73056.1COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]. (433 aa)    
Predicted Functional Partners:
ABM71750.1
Related to short-chain alcohol dehydrogenases; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only].
   
 
  0.902
dgkA
COG818 Diacylglycerol kinase [Cell envelope biogenesis, outer membrane].
   
 
  0.900
ABM71866.1
Lipase family protein.
   
 
  0.900
ABM73057.1
Possible amidase enhancer; COG2385 Sporulation protein and related proteins [Cell division and chromosome partitioning].
       0.762
ABM71214.1
COG5010 Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
  
 
 0.757
rpmI
COG291 Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Belongs to the bacterial ribosomal protein bL35 family.
       0.616
ABM72593.1
Hypothetical protein; COG489 ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].
 
  
 0.600
ABM71664.1
Conserved hypothetical protein.
  
 
 0.587
ABM72184.1
Conserved hypothetical protein.
  
 
 0.587
ABM72598.1
Hypothetical protein.
  
 
 0.587
Your Current Organism:
Prochlorococcus marinus MIT9515
NCBI taxonomy Id: 167542
Other names: P. marinus str. MIT 9515, Prochlorococcus marinus str. MIT 9515
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