STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EV00_0485Ribosomal protein S12p Asp88 methylthiotransferase; Alternative locus ID: PMIT9322_1254. (454 aa)    
Predicted Functional Partners:
EV00_0852
Ribosomal RNA large subunit methyltransferase N; Alternative locus ID: PMIT9322_0674.
  
  
 0.708
EV00_0484
Putative membrane protein; Alternative locus ID: PMIT9322_1253.
       0.665
EV00_1812
Signal peptidase I; Alternative locus ID: PMIT9322_0496.
   
    0.574
EV00_1036
Putative radical SAM family enzyme in heat shock protein cluster; Alternative locus ID: PMIT9322_0858; similarity with CPO of BS HemN-type.
 
   
 0.468
EV00_1742
Uroporphyrinogen III decarboxylase; Alternative locus ID: PMIT9322_0426.
     
 0.424
EV00_0259
Sulfur carrier protein adenylyltransferase ThiF; Alternative locus ID: PMIT9322_1611.
     
 0.423
EV00_0483
L-aspartate oxidase; Alternative locus ID: PMIT9322_1252.
      
 0.422
EV00_1082
Alternative locus ID: PMIT9322_0904; Cobalt-precorrin-6y C15-methyltransferase (decarboxylating).
      
 0.400
Your Current Organism:
Prochlorococcus marinus MIT9322
NCBI taxonomy Id: 167550
Other names: P. marinus str. MIT 9322, Prochlorococcus marinus str. MIT 9322
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