STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EV00_0821Phytoene dehydrogenase; Alternative locus ID: PMIT9322_1918. (509 aa)    
Predicted Functional Partners:
EV00_0527
Phytoene synthase; Alternative locus ID: PMIT9322_1296.
 
 
 0.946
EV00_0498
Pro-zeta-carotene desaturase; Alternative locus ID: PMIT9322_1267; prolycopene producing.
  
  
 0.932
EV00_0528
Phytoene desaturase; Alternative locus ID: PMIT9322_1297; pro-zeta-carotene producing.
  
  
 0.732
EV00_0675
Protoporphyrin IX Mg-chelatase subunit D; Alternative locus ID: PMIT9322_1444.
  
 
 0.638
EV00_1538
Geranylgeranyl hydrogenase BchP; Alternative locus ID: PMIT9322_0222; Geranylgeranyl reductase.
  
 
 0.635
EV00_0552
Mg-protoporphyrin O-methyltransferase; Alternative locus ID: PMIT9322_1321.
  
  
 0.587
EV00_1900
Chlorophyll a synthase ChlG; Alternative locus ID: PMIT9322_0584.
  
 
 0.562
EV00_0763
Lycopene beta cyclase; Alternative locus ID: PMIT9322_1745.
  
 
 0.528
EV00_0822
Hypothetical protein; Alternative locus ID: PMIT9322_1919; FIG00941615: hypothetical protein.
       0.528
EV00_0712
Carotenoid cis-trans isomerase; Alternative locus ID: PMIT9322_1694.
  
  
 
0.517
Your Current Organism:
Prochlorococcus marinus MIT9322
NCBI taxonomy Id: 167550
Other names: P. marinus str. MIT 9322, Prochlorococcus marinus str. MIT 9322
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